Pubblicazioni

Pubblicazioni degli ultimi 5 anni
  1. Farneti B, Di Guardo M, Khomenko I, Cappellin L, Biasioli F, Velasco R, Costa F (2017) Genome-wide association study unravels the genetic control of the apple volatilome and its interplay with fruit texture. J Exp Bot (in press)
  2. Pessina S., Palmieri L., Bianco L., Gassmann J., Visser R.G.F., Schouten H.J., Salamini F. , Velasco R., Malnoy M.A. (2017) Frequency of a natural truncated allele of MdMLO19 in the germplasm of Malus domestica. Mol. Breed. 37:7
  3. Malnoy M, Viola R, Jung M-H, Koo O, Kim S, Kim J-S, Velasco R, Kanchiswamy CN,  (2016) DNA-free genetically edited fruit crop plants using CRISPR/Cas9 ribonucleoproteins. Frontiers Plant Science 7:1904
  4. Di Pierro EA, Gianfranceschi L, Kruisselbrink JW, Bianco L, Troggio M,. Bink CAM, Voorrips E, Di Guardo M, Koehorst HJJ van Putten, Aziz E, Tartarini S, Pagliarani G, Muranty H, Garkava-Gustavsson L, Longhi S, Micheletti D, Velasco R, Laurens F, van de Weg E (2016) A high-density, multi-parental, integrated SNP linkage map of the obliged outcrossing species Malus × domestica (Borkh), through a novel mapping approach. HortRes 3:16057
  5. Tadiello A, Longhi S, Moretto M, Ferrarini A, Farneti B, Busatto N, Vrhovsek U, Biasioli F, Cappellin L, Sholz M, Velasco R, Trainotti L, Delledonne M, Costa F. (2016) Integrative approach combining transcriptomic assay with physical and metabolite analysis reveal novel clues about the regulatory mechanism governing the climacteric ripening physiology in apple (Malus x domestica Borkh.). Pl. Journal 6:963-975
  6. Buti M, Sargent DJ, Mhelembe KG, Delfino P, Tobutt KR, Velasco R (2016) Genotyping-by-sequencing in an orphan plant species Physocarpus opulifolius helps identify the evolutionary origins of the genus Prunus. BMC Genomics 9:268
  7. Pessina S, Angeli D, Martens S, Visser R.G.F, Bai Y, Salamini F, Velasco R, Schouten H.J, Malnoy M. (2016) Knock-down of MdMLO19 reduces susceptibility to powdery mildew (Podosphaera leucotricha) in Malus x domestica Borkh. Plant Biotech J 14:2033-2044
  8. Kanchiswamy CN, Maffei M , Malnoy M, Velasco R , Kim J-S. (2016) Fine-tuning next-generation genome editing tools. Trends Biotech 34(7): 562-574
  9. Montanari S, Perchepied L,  Bus VGM, Gardiner SE, Chagné D , Durel CE, Velasco R, Malnoy M (2016) Quantitative genetic analysis for fire blight resistance in a pear interspecific family: a major QTL stable through environments and populations mapped to linkage group 2. Mol Breed 36: 47-
  10. Pessina S, Lenzi L,  Perazzolli M, Campa M, Dalla Costa L, Urso S, Valè G, Salamini F, Velasco R, Malnoy M. (2016) Knock-down of MLO genes reduces susceptibility to powdery mildew in grapevine. HortRes 3:16016
  11. Bianco L, Cestaro A, Linsmith G, Muranty H, Micheletti D, Denance C, Kershbamer E, Larger S, Pindo M, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. (2016) Development and validation of the Axiom® Apple480K SNP genotyping array. Plant J 86, 62–74
  12. Busatto N, Farneti B, Tadiello A, Velasco R, Costa G, Costa F (2016) Candidate gene expression profiling reveals a time specific activation among different harvesting dates in 'Golden Delicious' and 'Fuji' apple cultivars. Euphytica 208:401–413
  13. Montanari S, Brewer L, Lamberts R, Velasco R, Malnoy M, Perchepied L, Guerif P, Durel CE, Bus VGM, Gardiner SE, Durel  CE, Chagné D (2016). Genome mapping of post-zygotic hybrid necrosis in an interspecific pear population. HortRes 3:15064
  14. Sargent, JD; Yang, Y; Surbanovski, N; Bianco, L; Buti, M; Velasco, R; Giongo, L, Davis, TM (2016) HaploSNP affinities and linkage map positions illuminate subgenome composition in the octoploid, cultivated strawberry (Fragaria × ananassa). Pl. Science 242: 140-150
  15. Muranty H, Troggio M, Ben Sadok I, Al Ridai M, Auwerkerken A, Banchi E, Velasco R, Stevanato P, Van de Weg E, Di Guardo M, Laurens F, Bink CAM (2015) Accuracy and responses of genomic selection on traits scored at harvest in apple. HortRes 2:15060
  16. Cova V, Bandara N L, Tartarini S, Gessler C, Troggio M, Velasco R, Komjanc M (2015) Fine mapping of Rvi5 (Vm) scab resistance locus in apple (Malus × domestica Borkh.) Mol. Breed. 35(10): 200
  17. Di Guardo M, Micheletti D, Bianco L, Koehorst-van Putten KJJ, Longhi S, Costa F,  Aranzana MJ, Velasco R, Arús P, Troggio M, van de Weg EW. ASSIsT: An Automatic SNP ScorIng Tool for in- and outbreeding species. Bioinformatics, 2015:1-2
  18. Potenza E, Racchi M, Sterck L, Asquini E, Velasco R, Van de Peer Y, Cestaro A (2015) Alternative splicing evaluation of 10 different grapevine cultivars. BMC Genomics 16:706
  19. Malacarne G, Costantini L, Coller, E,  Battilana J, Velasco R, Vrhovsek U , Grando M.S, Moser C (2015) Integration of transcriptional profiling and metabolic QTL related to flavonol content and composition in (Syrah x Pinot noir) mature grapes. J Exp Bot 66(15): 4441-4453
  20. Falginella L, Cipriani G, Monte C, Testolin R, Velasco R, Troggio M, Gregori R, Tartarini S (2015) A major QTL controlling apple skin russeting on linkage group 12 in the ‘Renetta Grigia di Torriana’ variety. BMC Plant Biol 15:150
  21. Kanchiswamy CN, Malnoy M, Velasco R, Kim J-S, Viola R (2015) Non-GMO genetically edited crop plants. Trends Biotech 33(9): 489-491
  22. Montanari S, Guérif P, Ravon E, Denancé C, Muranty H, Robert P, Velasco R, Chagné D, Bus V, Perchepied L, Durel CE (2015) QTL detection for Cacopsylla pyri resistance in an interspecific pear (Pyrus spp.) population. Tree Genen. Genomes 11:74
  23. Farneti B, Busatto N, Khomenko I, Cappellin L, Gutierrez S, Spinelli F, Velasco R, Biasioli F, Costa G, Costa F (2015) Untargeted metabolomics investigation of volatile compounds involved in the development of apple superficial scald by PTR-ToF–MS. Metabolomics 11:341-349
  24. Buti M, Poles L, Caset D, Magnago P, Fernandez Fernandez F, Colgan RJ, Velasco R, Sargent DJ (2015) Identification and validation of a QTL influencing bitter pit symptoms in apple (Malus pumila). Mol. Breeding 35:29-39
  25. Salvi S, Piazza S, Predieri S, Fuochi P, Velasco R, Malnoy M (2015) High frequency of chromosome deletions in regenerated and mutagenized apple (Malus x domestica Borkh.) seedlings. Mol. Breeding 34:5-14
  26. Cova V, Lasserre-Zuber P, Piazza S, Cestaro A, Velasco R, Durel CE, Malnoy M (2015) High-resolution genetic and physical map of the Rvi1 (Vg) apple scab resistance locus. Mol. Breeding 35:16-28
  27. Cappellin L, Farneti B, Di Guardo M, Busatto N, Khomenko I, Romano A, Velasco R, Costa G, Biasioli F, Costa F (2015) QTL analysis coupled with PTR-ToF-MS and candidate gene based association mapping validate the role of Md-AAT1SSR as a major gene in the control of flavor in apple fruit. Plant Mol. Biol. Rep. 33:239–252
  28. Kanchiswamy CN, Sargent DJ, Velasco R, Maffei ME, Malnoy M (2015) Looking forward: biotechnology of fruit crops. Trends Biotech. 33 (2): 61-62
  29. Gardner KM, Brown P, Cooke T, Cann S, Bustamante C, Velasco R, Troggio M and Myles S. (2014) Fast and cost-effective genetic mapping in apple using next-generation sequencing. G3 Genes| Genomes | Genetics 4(9): 1681-1687
  30. Padmarasu S, Sargent DJ, Jaensch M, Kellerhalls M, Tartarini S, Velasco R, Troggio M, Patocchi A. (2014) Fine-mapping of the apple scab resistance locus Rvi12 (Vb) derived from “Hansen's baccata #2”. Mol. Breeding 34:2119–2129
  31. Soriano JM, Madduri M, Schaart JG, van der Burgh A, van Kaauwen MPW, Tomic L, Groenwold R, Velasco R, van de Weg E, Schouten HJ (2014) Fine mapping of the gene Rvi18 (V25) for broad-spectrum resistance to apple scab, and development of a linked SSR marker suitable for marker-assisted breeding. Mol. Breeding 34:2021–2032
  32. Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Viola R, Gut I, Chagné D, Velasco R, van de Weg E, Troggio M (2014) Development and validation of a 20K SNP whole genome genotyping array for apple (Malus × domestica Borkh). PLoSONE 9(10):e110377
  33. Migliaro D, Crespan M, Munoz-Organero G, Velasco R, Moser C, Vezzulli S (2014) Structural dynamics at the berry colour locus in Vitis vinifera L. somatic variants. Austr. J. Grape and Wine Res. 20, 485–495
  34. Longhi S, Giongo L, Buti M, Šurbanovski N, Viola R, Velasco R, Ward JA, Sargent DJ (2014) Molecular genetics and genomics of the Rosoideae – state of the art and future perspectives. Horticulture Research 1: 1
  35. Fischer TA, Malnoy M, Hofmann T, Schwab W, Palmieri L, Wehrens R, Schuch LA, Müller M, Schimmelpfeng H, Velasco R, Martens S (2014) An F1 hybrid of cultivated apple (Malus x domestica) and European pear (Pyrus communis) with fertile F2 offspring. Mol Breeding 34:817–828
  36. Velasco R, Licciardello C (2014) A genealogy of the citrus family. Nature Biotechnology 32(7)640-642
  37. Busatto N, Farneti B, Tadiello A, Vrhovsek U, Cappellin L, Biasioli F, Velasco R, Costa G, Costa F (2014) Target metabolite and gene transcription profiling during the development of superficial scald in apple  (Malus x domestica Borkh) BMC Plant Biol 14(1):193
  38. Salvi S, Micheletti D, Magnago P, Fontanari M, Viola R, Pindo M, Velasco R (2014) One-step reconstruction of multigeneration pedigree networks in apple (Malus x domestica Borkh.) and the parentage of Golden Delicious. Mol. Breeding 34:511–524
  39. Barghini E, Natali L, Cossu MR, Pindo M, Cattonaro F, Scalabrin S, Velasco R, Morgante M, Cavallini A (2014) The peculiar landscape of repetitive sequence in the olive (Olea europaea L.) genome. Genome Biol. Evol. 6 (4): 776-791
  40. Chagnè D, Crowhurst R, Pindo M, .....Viola R,….., Troggio M,… Gardiner S E., Velasco R (2014) The draft genome sequence of European pear (Pyrus communis L. ‘Bartlett’). PLoSONE 9(4):e92644
  41. Costa F, Cappellin L, Farneti B, Tadiello A, Romano A, Soukoulis C, Sansavini S, Velasco R, Biasioli F (2014) Advances on QTL mappig for ethylene production in apple (Malus x domestica Borkh.) Postharvest Biol Tec 87: 126-132
  42. Perazzolli M, Malacarne G, Baldo A, Righetti L, Bailey AG, Fontana P, Velasco R, Malnoy M (2014) Characterization of NBS resistance genes in apple (Malus x domestica Borkh.) and the evolutionary history of the Rosaceae family. PLoSONE 9(2):e83844
  43. Wolters PJ, Schouten H, Velasco R, Si-Ammour A,  Baldi P, (2013) The apple columnar habit associates with bud-specific overexpression of a 2OG-Fe(II) oxygenase-like gene. New Phytologist 200: 993–999
  44. Ferrarini M, Moretto M, Ward JA, Surbanovsky N, Stefanovic V, Giongo L, Viola R, Cavalieri D, Velasco R, Cestaro A, Sargent DJ (2013) An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplst genome. BMC Genomics 4(1):670
  45. Di Guardo M, Tadiello A, Farneti B, Lorenz G, Masuero D, Vhrovsek U, Costa G, Velasco R, Costa F (2013) Multidisciplinary approach provides novel insight about fruit flesh browning physiology in apple (Malus x domestica Borkh.). PLoSONE 8(10):e78004
  46. Montanari S, Saeed M, Knaebel M, Kim YK, Troggio M, Malnoy M, Velasco R, Fontana P,  Won KH, Durel CE, Perchepied L, Schaffer R, Wiedow C,  Bus V, Brewer L, Gardiner SE,  Crowhurst RN, Chagnè D. (2013) Identification of Pyrus Single Nucleotide Polymorphisms (SNPs) and Evaluation for Genetic Mapping in European Pear and Interspecific Pyrus Hybrids. PLoSONE 8(10):e77022
  47. Troggio M, Šurbanovski N, Bianco L, Moretto M, Giongo L, Viola R, Fernandez Fernandez F, Costa F, Velasco R, Cestaro A, Sargent DJ. (2013) Manual annotation of SNP data from the Malus Infinium® array identifies challenges for genetic analysis of the complex apple genome. PLoSONE 8(6):e67407
  48. Nikoforova SV, Cavalieri D, Velasco R, Goremykin V (2013) Analysis of 47 chloroplast genomes clarifies the contribution of wildspecies to the domesticated apple maternal line. Mol Biol Evol 30(8):1751-60
  49. Longhi S, Hamblin MT, Trainotti L, Peace CP, Velasco R, Costa F (2013) A candidate gene based approach validates Md-PG1 as the main responsible for a QTL impacting fruit texture in apple (Malus x domestica Borkh) BMC Plant Biology 13:37
  50. Chagnè D, Lin-Wang K, RV Espley, RK Volz, NM How, S Rouse, C Brendolise , CM Carlisle, S Kumar, N De Silva , D Micheletti , T McGhie , RN Crowhurst, RD Storey, R Velasco, RP Hellens, SE Gardiner, AC Allan. (2013) An ancient duplication of apple MYB transcription factors is responsible for novel red fruit-flesh phenotypes. Plant Phys. 161(1):225-39
  51. Ward JA, Bhangoo J, Fernández-Fernández F, Moore P, Swanson JD, Viola R, Velasco R, Bassil N, Weber C, Sargent JD (2013) Saturated linkage map construction in Rubus idaeus using genotyping by sequencing and genome-independent imputation. BMC Genomics 14:2
  52. Baldi P, Wolters PJ, Komjanc M, Viola R, Velasco R, Salvi S (2013) Genetic and physical characterization of the locus controlling columnar habit in apple (Malus x domestica Borkh.) Mol. Breeding 31:429–440