Workunit: P000008   Title:acp



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Model Details: ? Segment 1

 
     Model info:
     modelled residue range: 6 to 92
     based on template 1w2iB (1.50 Å)
     Sequence Identity [%]: 51.724
     Evalue: 9.20e-23
display model: as pdb - as DeepView project
download model: as pdb - as Deepview project - as text



Alignment   ? [top] 

TARGET    6         TRAHVF VSGTVQGVFY RASTRDAARE RGVRGWVRNL DDGRVEAVFE
1w2iB     2     ai--vrahlk iygrvqgvgf rwsmqreark lgvngwvrnl pdgsveavle
                                                                      
TARGET              ssssss ssss     h hhhhhhhhhh h  sssssss    sssssss
1w2iB           ss  ssssss ssss     h hhhhhhhhhh h  sssssss    sssssss


TARGET    52    GPESAVDSLI EWCHTGSPDA SVSDVSVSYT EPEGIDGFHI R         
1w2iB     50    gdeerveali gwahqgppla rvtrvevkwe qpkgekgfri vg        
                                                                      
TARGET          s hhhhhhhh hhhhh      ssssssssss       ssss s         
1w2iB           ssshhhhhhh hhhhh      ssssssssss       ssss s



Anolea / Gromos / Verify3D   ? [top]
anolea: on  off       gromos: on  off       verify3d: on  off




Modelling log   ? [top]
3.70 (SP3)
Loading Template: 1w2iB.pdb
Loading Raw Sequence
Renumber target sequence starting from  (6)
Loading Alignment: ./1w2iB_9.2E-23_51.724_45_6_92_3_89_1.50_-4062.090332_HHSEARCH_MODEL.align.submit.fasta
Removing HET groups from template structure
Refining Raw Sequence Alignment
ProModII: doing simple assignment of backbone
ProModII: adding blocking groups
Adding Missing Sidechains
AddPolar H
BuildDeletetedLoopsModel
Optimizing Sidechains
Adding Hydrogens
Optimizing loops and OXT (nb = 1)
Final Total Energy:       -3908.880 KJ/mol
Dumping Sequence Alignment



Template Selection Log:   ? [top] 
START PIPELINE ON ID: NXXX on BC2-cluster at Tue May 18 02:30:35 2010 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

###### SUMMARY: one * represents 1 residues #######
>TARGET
*********************************************************************************************
>1w2iB Eval:9.2E-23 SeqID:51.724 from:6 to:92 type:HHSEARCH
-----***************************************************************************************-


TEMPLATE ID    START          STOP           METHOD         STATUS         
1w2iB          6              92             HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: NXXX on BC2-Cluster at Tue May 18 02:40:25 2010





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SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2010.